2.37 Final Report: Report.pdf
Project file dump (~600MB): Project.tar.gz
Animation with "Blinking," aka, particles moving in and out of CV:
Animation with corrected "Blinking" error that images particles outside of CV (still with periodic BC applied). Note, the atoms are blown up here to show detail, but it is the same structure as above.
The whole code (Download it!) Style generated from http://www.planetb.ca/2008/11/syntax-highlight-code-in-word-documents/.